Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs147355245 chr10:104646089 C/CT 5.75E-9 487 31.03 35.33 29.58 KM Plot
THCA rs147456421 chr2:28993044 G/A 0.000137 503 31.68 30.93 38.87 KM Plot
THCA rs147548472 chr16:79276192 A/G 0 494 31.5 31.67 5.8 KM Plot
THCA rs1475740 chr13:108843999 T/C 7.18E-7 484 26.25 31.9 31.4 KM Plot
THCA rs147649800 chr3:97030661 C/CAA 1.34E-5 501 31.4 35.23 26.47 KM Plot
THCA rs148004070 chr13:108852675 AAGT/A 3.07E-5 495 31.7 31.72 27.6 KM Plot
THCA rs148333421 chr10:104634010 C/CG 1.09E-13 494 31.03 36.17 32.1 KM Plot
THCA rs148338174 chr20:47333777 AG/A 4.69E-9 502 31.53 32.1 18.22 KM Plot
THCA rs148388596 chr8:60158829 CACAACGCCTCTTCTCCGGTGGGCTAA/C 0.000111 497 31.73 30.13 20.5 KM Plot
THCA rs149107893 chr3:63881923 CTTTCTCTCCCACTGCTAACTGGCCATCATTTAAATACATCTT/C 9.91E-5 486 31.62 31.67 33.97 KM Plot
THCA rs149152260 chr9:123780697 A/G 2.87E-5 502 31.7 31.37 21.97 KM Plot
THCA rs149532027 chr3:69169750 AAT/A 5.01E-7 495 31.98 30.27 14.62 KM Plot
THCA rs149589760 chr17:42598291 C/T 8.06E-5 500 31.47 36.62 53.23 KM Plot
THCA rs149901431 chr5:93340697 T/TAAGCAGTAAA 0.000115 491 31.47 33.1 17.27 KM Plot
THCA rs150150403 chr10:110941987 CAAAT/C 0.00014 500 31.47 32.9 32.1 KM Plot